Upload your own tree

If you are using iTOL to upload your own trees, try creating a personal account. More info about the iTOL personal accounts is available here.

Use this form to upload your own phylogenetic tree. It should be in plain text, in one of supported formats (Newick, Nexus or PhyloXML) . Please check our help pages for detailed instructions and explanation of supported formats and extra features available.

You can either paste your tree into the box, or upload a file using the file selector below. Don't forget to select the correct tree format.

Paste or type the tree:		Upload a file which contains your tree:
Paste your tree here...		Tree format: Make sure the file is plain text, and contains only trees in the selected format.
Optional information
Tree name:		if you don't specify a name, a numeric ID will be used instead
Advanced options (click to show)
Font style definitions:		used only for export to graphical formats
Names for internal nodes:		define custom names for internal nodes in the tree
Color definitions:		define colors for branches, leaf labels and color ranges
Branch labels:		define custom labels for branches and leafs
Horizontal gene transfers:		define horizontal gene transfers within the tree
Keep internal node IDs:		displays internal node IDs in popups when you mouseover them; also needed for displaying labels on internal nodes in exported trees
Pre-collapsed clades:		specify which clades should be collapsed by default; useful for large trees
Popup box info:		define custom HTML which will be displayed in each node's popup window

(if you're uploading extra data with your tree, fill the dataset section below before clicking 'Upload')

Upload datasets for your tree

iTOL can annotate phylogenetic trees with several types of data. Please check our help pages for the detailed explanation of supported data types and file formats required.

Dataset 1
Dataset 2
Dataset 3
Dataset 4
Dataset 5
Dataset 6
Dataset 7
Dataset 8
Dataset 9
Dataset 10

Dataset 1 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 1 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 2 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 2 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 3 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 3 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 4 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 4 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 5 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 5 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 6 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 6 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 7 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 7 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 8 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 8 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 9 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 9 color:		used in the legends and for datasets where the color is not specified in the dataset file

Dataset 10 file:		please use plain text files only
Display label:		label will be used in the legends
Field delimiter:	Space Tab Comma	make sure the correct delimiter is selected
Data type:		check the help pages for detailed descriptions
Prevent overlap:	Yes No	if yes, other dataset types will start after the end of last strip dataset
Strip width:	pixels	strip will have the specified width in pixels (valid range: 10 - 100)
Branch coloring:	none (show only leaf boxes) color branches and show boxes color branches only	should the branches be colored using this dataset?
Protein size:	Maximum: pixels	longest protein in the dataset will have this pixel size (valid range 1-5000)
Bar size:	Maximum: pixels	maximum value in the dataset will have this pixel size (valid range 1-5000)
Total size:	pixels	whiskers and/or extreme values will be scaled to fit into the selected size (valid range 1-5000)
Raw data provided:	Yes No	if you provide the raw data, iTOL will automatically calculate the values needed to display the boxplots
Lower percentile:	%	values above the set percentile will be included in the box (valid range 0-99)
Upper percentile:	%	values below the set percentile will be included in the box (valid range 1-100)
Step constant:		this constant multiplied with the box size will define the related whisker size (valid value >0)
Calculate extremes:	Yes No	if set to 'No' only the boxes and whiskers will be calculated
Pie chart radius:	Minimum: pixels Maximum: pixels	pie chart radii will be scaled to match the selected values (valid range 10-500)
Transparent pie charts	Yes No	if transprent, you will be able to see overlapping pie charts, but the colors will be slightly changed
Align individual fields:	Yes No	if selected, each individual field's start will be aligned (multi bar charts only)
Minimum radius:	% of maximum	Maximum radius will depend on the available space between leaves, and minimum radius will be calculated based on the percentage specified here (valid range 0-100)
Display grid:	vertical horizontal	Display vertical and/or horizontal grid connecting the circles
Circle spacing:	px	horizontal spacing between circles (valid range 0-500)
Fill style:	empty filled transparent	Should the circles be filled or empty? Filled circles will be fully opaque by default, unless 'Transparent' is checked.
Minimum value:		minimum value and its corresponding color in the heatmap
Mid-point value:		mid-point value and its corresponding color in the heatmap
Maximum value:		maximum value and its corresponding color in the heatmap
Box width:	pixels	pixel width of an individual value's box in the heatmap. Total width for the dataset cannot exceed 5000 px.
Additional Newick tree:		If uploaded, the tree will be displayed above the heatmap. Heatmap fields will be sorted to match the tree structure.
Dataset 10 color:		used in the legends and for datasets where the color is not specified in the dataset file

Retrieve a previously uploaded tree